If you are having trouble with installation of Perl or modules, use online resources that explain the details of how to download Perl, get it working (Linux, Mac OS X, Windows [#Installing_Perl_on_Windows_for_the_First_Time.3F'>win32.perl.org wiki, ActiveState, Strawberry]), and how to install modules (UNIX, Windows). If you're still stuck, post your questions to the Circos group.
I have been trying to install GD library for perl to no avail a long while now. I've tried every little thing I could find on the internets but nothing. I am trying to get Circos graphs which requi. As Nerdling points out, PHP must be compiled with the GD extension enabled, therefore there's no clean way of adding GD2 to the version of PHP that ships with Mac OS X. This solution worked for me (Mac OS X 10.5.2, should work with any 10.5), but you'll have to make a new PHP installation.
Need to install modules? See A Guide to Installing Modules and its corresponding tutorial for Windows users.
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Having trouble with libgd and GD? See the Perl Monks libgd/GD Tutorial, Shaun Jackman's Homebrew formula, Wang's install zlib/libpng/jpeg/freetype/libgd/GD on Mavericks as well as my own guide for installation of libpng, freetype, libgd and GD on Mac OS X Mavericks. There are some #!topic/circos-data-visualization/MOdx0eKWDeQ'>useful threads in the Google Group about this.
Need to run Bash shell batch files in Windows? You'll need to install a UNIX command line shell, like Cygwin.
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Stumped by an error? Mac os users need to download. A good strategy is to Google the error message (e.g. #sclient=psy&hl=en&rlz=1B7GGLL_enCA396CA396&source=hp&q=mkdir+%2Fusr%2Flocal%2Fshare%2Fman:+permission+denied&aq=f&aqi=&aql=&oq=&pbx=1&fp=58653f3aee9cd59b'>mkdir /usr/local/share/man: permission denied) to find the solution.
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Want to learn more about Perl? Try learn.perl.org.